Geno 2.0 y snps of O


Posts: 59
Joined: Fri Mar 16, 2012 12:14 pm
PostPosted: Sat Dec 15, 2012 12:36 pm
these snps seems derived from O,common to O1 and O3
CTS2340, CTS3771, CTS7942, CTS8746, F171, F175, F182, F282, F355, F380, F478, F494, F537, F540, F546, F600, F614, F668, L101, P188
Last edited by dawnland on Sat Dec 15, 2012 6:05 pm, edited 1 time in total.

Posts: 2
Joined: Thu Mar 15, 2012 7:52 am
PostPosted: Sat Dec 15, 2012 1:25 pm
Is there any O2 Geno 2.0 member online?We caan compare O1,O2 and O3

Posts: 59
Joined: Fri Mar 16, 2012 12:14 pm
PostPosted: Sat Dec 15, 2012 5:59 pm
After compared some geno 2.0 results form other haplogroups,find these snps are derived from NO:
CTS5858,F156,F176,F287,F306,F3566,F415,F468,F53,F549,F650,F658

some relationship between the upstream and downstream:
CTS5858,F156,F176,F287,F306,F3566,F415,F468,F53,F549,F650,F658,M214,P192,P193, P194,P195 (NO)
CTS2340 CTS3771 CTS7942 CTS8746 (O)
CTS8153 CTS8399 CTS10736 CTS10753 (O3)

Posts: 59
Joined: Fri Mar 16, 2012 12:14 pm
PostPosted: Mon Dec 17, 2012 4:30 pm
according to the new CTS SNPs from Thomas Krahn's browser,the upstream and downstream like:
CTS5858 (NO)
^CTS2340 CTS3771 CTS7942 CTS8746 (O)
^^CTS8153 CTS8399 CTS10736 CTS10753 (O3)
^^^CTS1558 CTS2483 CTS5687 CTS5879 CTS7638 CTS11981
^^^^CTS11193
^^^CTS8236
^^^^CTS201 CTS445 CTS3106 CTS5153 CTS6290 CTS11727
^^^^^CTS1763 CTS10186 CTS3909 CTS3994 CTS4411 CTS4539 CTS5166 CTS5823 CTS5916 CTS7160 CTS7290 CTS7353 CTS7405 CTS7452 CTS7496 CTS7785 CTS8003 CTS8218 CTS8342 CTS8747 CTS8784 CTS9502 CTS10478 CTS10653 CTS10827 CTS11145
^^^^^^CTS7601 CTS11525
^^^^CTS4723 CTS11109 CTS12099
^^^^^CTS1366
^^^^^CTS11580
^^^^^^CTS899 CTS1275 CTS2338 CTS2861 CTS3251 CTS3255 CTS4111 CTS5128 CTS5866 CTS6623 CTS11742 CTS11856 CTS12876
^^^^^^^CTS1604 CTS10474 CTS8295
^^^^^^^CTS1304
^^^^^^^CTS2609
^^^^^^^CTS4658
^^^^^^^CTS5492
^^^^^^CTS7655
^^^^^^^CTS816 CTS1011 CTS1844 CTS2643 CTS3871 CTS9350 CTS10488 CTS11192 CTS11459
^^^^^^^CTS1933

Posts: 59
Joined: Fri Mar 16, 2012 12:14 pm
PostPosted: Mon Dec 17, 2012 4:54 pm
one O3 results,from O3 to O3a3c1 and it's downstreams, has 22 CTS ,57 F ,10 others,total 89 snps:
CTS10736, CTS10753 CTS11109, CTS11580, CTS11742, CTS11856, CTS12099, CTS1275, CTS12876, CTS2338, CTS2861, CTS3251, CTS3255, CTS4111, CTS4723 CTS5128 CTS5866, CTS6623, CTS8153, CTS8236 CTS8399, CTS899, F103, F113, F129, F130, F131, F139, F141, F144, F146, F148, F149, F151, F166, F204, F235 F246, F257, F267 F27, F299, F341, F342, F348, F36, F363 F3710, F373, F400, F406, F417, F42, F422, F427, F432, F433, F438, F450, F471, F476, F484, F515, F522, F525, F572, F579, F581, F584, F613, F615, F633, F649, F688, F697, F71, F76, F8, F80, M122, M133, M134, P164, P197, P198, P199, P200, P201, PAGES00023

one O1 results,from O1,O2 common part to O1a1 and it's downstreams,has 22 CTS ,63 F ,6 others,total 91 snps
CTS10777, CTS10963, CTS10969, CTS11688, CTS11967, CTS2458, CTS2526, CTS3422, CTS3758, CTS4351, CTS4585, CTS480, CTS5473, CTS6856, CTS6864, CTS7015, CTS8229, CTS8875, CTS8934, CTS9321, CTS9501, CTS9937, F1, F101, F111, F121, F128, F140, F143, F147, F153, F157, F158, F165, F168, F187, F199, F206,F214, F231, F236, F258, F261, F265, F278, F291, F303, F308, F31, F32, F320, F324, F333, F335, F337, F340, F343, F361, F3686, F385, F41, F410, F421, F424, F429, F443, F446, F465, F477, F518, F533, F54, F544, F56, F560, F571, F599, F6, F74, F75, F78, F81, F87, F88, F89, L246, L247, L466, L83, M119, M307

Thomas Krahn's Y map
F265
^CTS480 CTS5473 CTS6856 CTS9501 CTS9937 CTS10777 CTS10969 CTS11967
^^CTS2458 CTS3422 CTS3758 CTS4351 CTS4585 CTS6864 CTS7015 CTS8229 CTS8875 CTS8934 CTS9321 CTS10963 CTS11688
it list CTS2526 as hg M,this snp is also found in M307+ YH sequence,maybe common to O1

Posts: 40
Joined: Tue Jul 31, 2012 7:46 pm
PostPosted: Wed Dec 19, 2012 8:01 pm
M122 (O3) equivalent: F129, F400, F433, F471, F633
M324 equivalent (O3a): F113, F166, F27, F341, F36, F406, F572, F71.
P201 equivalent: F525
P164 equivalnet: F130, F131, F299, F422, F427.
M134 equivlanet: F103, F151, F450, F417, F515.

Posts: 40
Joined: Tue Jul 31, 2012 7:46 pm
PostPosted: Thu Jan 03, 2013 11:22 pm
L127.1/KL1 equivalent: F412, F51, F145, F159, F164, F170, F243, F272, F300, F304, F305, F498, F573, F58, F601, F642, F676, F95,
002611 equivalent: F18, F240, F247, F249, F302, F309, F460, F463, F562, F61, F99
F11 equivalent: F197, F526, F664.

Posts: 59
Joined: Fri Mar 16, 2012 12:14 pm
PostPosted: Sat Jan 05, 2013 5:19 pm
CTS1558 CTS2483 CTS5687 CTS5879 CTS7638 CTS11981 likely equivalent to L127(O3a1)
CTS11839, CTS3663, CTS4414, CTS5822 (F11 downstreams)
CTS8236 likely equivalent to P201 (O3a2)
CTS4723 CTS11109 CTS12099 likely equivalent to P164(O3a2c)
CTS11580 likely equivalent to M134(O3a2c1)
CTS899 CTS1275 CTS2338 CTS2861 CTS3251 CTS3255 CTS4111 CTS5128 CTS5866 CTS6623 CTS11742 CTS11856 CTS12876 likely equivalent to M117(O3a2c1a)

N77456 doesn't have F249,maybe no call?interesting he is PF4341+,the snp is Approx. hg: I,Extracted from genome study of Sardinian samples,maybe a new snp if the result is accurate.
and CTS7789 is Extracted from 1000 genomes data.Not qualified accdrding to Thomas Krahn's Y map.

Posts: 40
Joined: Tue Jul 31, 2012 7:46 pm
PostPosted: Mon Jan 07, 2013 3:48 pm
There is no way to tell whether F249 is a missed call or something else in N77456 until we see more results.

Posts: 40
Joined: Tue Jul 31, 2012 7:46 pm
PostPosted: Mon Feb 04, 2013 8:16 pm
CTS7655 probably equals F444, a major subgroup under M134.
CTS2643, CTS9350, CTS 11192, and CTS11459 are probably equivalent of F46, a major subgroup under F444.
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